- Dcode - Tools developed at the Comparative Genomics Center at Lawrence Livermore National Laboratory, California.
- PhenoSystems - Gensearch offers locus specific software application assisting biologists in the analysis of DNA sequences, for potential mutation locations, interpreting their potential consequences.
- Southwest Parallel Software, Inc. - Commercial versions of Phil Green's Phrap, Swat and Cross-Match sequence analysis tools. Some trial versions available for download.
- Staden Package - Introduction, documentation and downloads for DNA sequence analysis. Includes related courses in Cambridge, England.
- The Vienna RNA Package - A free suit of software for the analysis of RNA secondary structure, including structure prediction and comparison as well as sequence design.
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