- BLAST - Suite of alignment tools to detect conserved sequences, similar domain architecture, gene expression profiles, and SNP using protein or nucleotide targets. Includes support and archiving of strategies at NCBI, Bethesda, Maryland.
- ESPript - Formatting of multiple sequence alignments to a color postscript file. Can include graphical features by using PDB entry.
- GeneMatcher - Access to Smith-Waterman-based FDF sequence comparison program, with excellent explanation of when to use it vs. BLAST - from the Univ. of Lausanne, FR.
- GeneStream II - Sequence comparison and search programs, including the rigorous Smith-Waterman algorithm (in FastA and Ssearch), from the IGH, Montpellier FR.
- HMM library for all proteins of known structure - This is a server for structural superfamily assignments to protein sequences using Hidden Markov Models. The services included are: -homology searching -alignments -genome assignments
- Interactive Blast Query - Utility for online manipulation of Blast results. Results organized in a table format.
- mreps : maximal tandem repeats search - Open source tool for identifying serial repeats (tandem repeats) in DNA sequences.
- Sequence Alignment and Modeling System - Implementation of hidden Markov models for sequence analysis. Free UNIX software for nonprofit groups, and sequences can be submitted online.
- The ISREC Group Servers - Detection and assessment of similarity between distantly related sequences by means of a variety of remotely-executable software - from the Swiss Inst. for Experimental Cancer Research.
- WU-BLAST Archives - Sensitive, selective, and rapid sequence database searching with gapped alignments - from Washington Univ.-St.Louis.
Last update: Apr 28, 2012 18:35:03. Phy.org is a private web site, powered by the Open Directory Project.
